Uh, yea, there are a lot of numbers changes.
For the record, there are currently 62 bonus ship types (3 more planned for the expansion that aren't done yet). All were touched in this, though the ones that aren't affected by unit-cap-scale (spire stealth battleships, etc) were touched less since their caps didn't change. Just some internal math to make it easier to make changes based on cap-stats instead of individual-stats.