I do not think there are any ships immune to translocation, it is one of the things that makes the Military Command Station so survivable. (Anyone seen a Golem get translocated?)
As for the bomber starship, I am not aware of an actual list. The rule of thumb I use is that Bomber Starships can not attack fleet ships but can attack everything else. The problem with that is I think some of the larger fleet ships, such as Spire Stealth Battleships can be targeted by the Bomber Starship. (Someone confirm that for me?)
D.