I destroyed the warp gate on a planet with an Armored Golem, and am now pumping infiltrators from an adjacent planet. I'll let it just wear itself out.
I'll tackle the Botnet when I have more powerful ships, which can hopefully take it out in one wave.
I'm going to try my luck with starships and see if they pack a bigger punch against the Golems. I have enough K to unlock Zenith, so I'll see how they do.
I must have the experimental engineers the Armored Golem is guarding...
Zenith Starships made a huge difference. It still took some time, but I was able to put them in and pull them out in 30sec rotations or so, with a quick repair, and send them back in.