Ah, gotcha. Well, I can 100% guarantee, no questions, that this is a gatekeeper app translocation issue. This line:
/private/var/folders/ss/_ykx_pwn3mb6rkck1jfmkdd00000gn/T/AppTranslocation/CE894E8D-07CF-4EB3-AABD-2DF8D9E760AE/d/LastFederation.app/
Should read:
~/username/TheLastFederation/LastFederation.app/
And there are lines like that all in your log. I think that putting it directly in ~/username/ may not work. You might want to try ~/SomeFolder/TheLastFederation/ or ~/username/SomeFolder/TheLastFederation/
It's all voodoo, I'm not really sure why they did this. I'm not into conspiracy theories, and I love my iPhone and iPads, but darned if they aren't making me paranoid with this change on OSX.