Hi Cougar,
Thanks for the note, this is a very curious issue! Looks like this bug crept into the game in version 1.004 or 1.005. Basically, this only affects loading saved tutorials, and only affects the first time you load it (it will be consistent after that). All of your resources, in addition to the wormholes, got moved slightly. If you fix them in your existing game (delete and re-place), it will be fine from thereon in.
In the next prerelease version, to arrive this morning, this will be fixed so that it won't happen anymore -- but unfortunately it won't affect existing savegames. Basically, it was wrong at the very start when doing a new tutorial, but then correct after that point once you loaded a savegame.
Thanks for reporting this, and glad you're having such a good time in the tutorial campaign!